Week 10
Analysis of High Throughput Data with Bioconductor and Limma
Week 10 practical notebook is linked into your CoCalc account in the folder called “Week 10”, with the name Week_10_practical.ipynb
The data required for the practical is stored in a folder called “data_wk10” indide your “Week 10” directory on CoCalc.
The deadline for automatic collection of your notebook is 4th December (Week11) by 3:00pm.
You will them receive a notebook with solved exercises and a guideline for peer-marking. Collection of your peer-marking is: 6th December (Week 11) by 5:00pm. You can complete the marking any time before then, but it advisable that you also revise your own notebook using the solutions provided. This will help to improve yquicker your coding skils.
You are encouraged to discuss your work with your peer to work together. Remeber this is practicals won’t count to the final grade but they are essential to build the final project, which will count for 70% of your final grade.
Additional Reading
User guides are very useful when performing data analysis. Official user guides for affy and limma can be downloaed below.